nipype.interfaces package¶
Package contains interfaces for using existing functionality in other packages
Requires Packages to be installed
Subpackages¶
- nipype.interfaces.afni package
- Submodules
- nipype.interfaces.afni.base module
- nipype.interfaces.afni.model module
- nipype.interfaces.afni.preprocess module
- AlignEpiAnatPy
- Allineate
- AutoTLRC
- AutoTcorrelate
- Automask
- Bandpass
- BlurInMask
- BlurToFWHM
- ClipLevel
- DegreeCentrality
- Despike
- Detrend
- ECM
- Fim
- Fourier
- Hist
- LFCD
- Maskave
- Means
- OutlierCount
- QualityIndex
- Qwarp
- QwarpPlusMinus
- ROIStats
- Retroicor
- Seg
- SkullStrip
- TCorr1D
- TCorrMap
- TCorrelate
- TNorm
- TProject
- TShift
- TSmooth
- Volreg
- Warp
- nipype.interfaces.afni.svm module
- nipype.interfaces.afni.utils module
- Submodules
- nipype.interfaces.ants package
- nipype.interfaces.base package
- nipype.interfaces.brainsuite package
- nipype.interfaces.camino package
- nipype.interfaces.camino2trackvis package
- nipype.interfaces.cmtk package
- nipype.interfaces.diffusion_toolkit package
- nipype.interfaces.dipy package
- Submodules
- nipype.interfaces.dipy.anisotropic_power module
- nipype.interfaces.dipy.base module
- nipype.interfaces.dipy.preprocess module
- nipype.interfaces.dipy.reconstruction module
- nipype.interfaces.dipy.registration module
- nipype.interfaces.dipy.setup module
- nipype.interfaces.dipy.simulate module
- nipype.interfaces.dipy.stats module
- nipype.interfaces.dipy.tensors module
- nipype.interfaces.dipy.tracks module
- Submodules
- nipype.interfaces.dtitk package
- nipype.interfaces.elastix package
- nipype.interfaces.freesurfer package
- Submodules
- nipype.interfaces.freesurfer.base module
- nipype.interfaces.freesurfer.longitudinal module
- nipype.interfaces.freesurfer.model module
- nipype.interfaces.freesurfer.preprocess module
- nipype.interfaces.freesurfer.registration module
- nipype.interfaces.freesurfer.utils module
- AddXFormToHeader
- Aparc2Aseg
- Apas2Aseg
- ApplyMask
- CheckTalairachAlignment
- Contrast
- Curvature
- CurvatureStats
- EulerNumber
- ExtractMainComponent
- FixTopology
- ImageInfo
- Jacobian
- LTAConvert
- MRIFill
- MRIMarchingCubes
- MRIPretess
- MRITessellate
- MRIsCalc
- MRIsCombine
- MRIsConvert
- MRIsExpand
- MRIsInflate
- MakeAverageSubject
- MakeSurfaces
- ParcellationStats
- RelabelHypointensities
- RemoveIntersection
- RemoveNeck
- SampleToSurface
- SmoothTessellation
- Sphere
- Surface2VolTransform
- SurfaceSmooth
- SurfaceSnapshots
- SurfaceTransform
- TalairachAVI
- TalairachQC
- Tkregister2
- VolumeMask
- Submodules
- nipype.interfaces.fsl package
- Submodules
- nipype.interfaces.fsl.aroma module
- nipype.interfaces.fsl.base module
- nipype.interfaces.fsl.dti module
- nipype.interfaces.fsl.epi module
- nipype.interfaces.fsl.fix module
- nipype.interfaces.fsl.maths module
- nipype.interfaces.fsl.model module
- nipype.interfaces.fsl.possum module
- nipype.interfaces.fsl.preprocess module
- nipype.interfaces.fsl.utils module
- AvScale
- Complex
- ConvertWarp
- ConvertXFM
- CopyGeom
- ExtractROI
- FilterRegressor
- ImageMaths
- ImageMeants
- ImageStats
- InvWarp
- Merge
- MotionOutliers
- Overlay
- PlotMotionParams
- PlotTimeSeries
- PowerSpectrum
- Reorient2Std
- RobustFOV
- SigLoss
- Slice
- Slicer
- Smooth
- Split
- SwapDimensions
- WarpPoints
- WarpPointsFromStd
- WarpPointsToStd
- WarpUtils
- Submodules
- nipype.interfaces.minc package
- nipype.interfaces.mipav package
- Submodules
- nipype.interfaces.mipav.developer module
- JistBrainMgdmSegmentation
- JistBrainMp2rageDuraEstimation
- JistBrainMp2rageSkullStripping
- JistBrainPartialVolumeFilter
- JistCortexSurfaceMeshInflation
- JistIntensityMp2rageMasking
- JistLaminarProfileCalculator
- JistLaminarProfileGeometry
- JistLaminarProfileSampling
- JistLaminarROIAveraging
- JistLaminarVolumetricLayering
- MedicAlgorithmImageCalculator
- MedicAlgorithmLesionToads
- MedicAlgorithmMipavReorient
- MedicAlgorithmN3
- MedicAlgorithmSPECTRE2010
- MedicAlgorithmThresholdToBinaryMask
- RandomVol
- nipype.interfaces.mipav.generate_classes module
- nipype.interfaces.mipav.developer module
- Submodules
- nipype.interfaces.mixins package
- nipype.interfaces.mne package
- nipype.interfaces.mrtrix package
- nipype.interfaces.mrtrix3 package
- nipype.interfaces.niftyfit package
- nipype.interfaces.niftyreg package
- nipype.interfaces.niftyseg package
- Submodules
- nipype.interfaces.nipy package
- nipype.interfaces.nitime package
- nipype.interfaces.semtools package
- Subpackages
- nipype.interfaces.semtools.brains package
- nipype.interfaces.semtools.diffusion package
- Subpackages
- nipype.interfaces.semtools.diffusion.tractography package
- Submodules
- nipype.interfaces.semtools.diffusion.diffusion module
- nipype.interfaces.semtools.diffusion.gtract module
- compareTractInclusion
- extractNrrdVectorIndex
- gtractAnisotropyMap
- gtractAverageBvalues
- gtractClipAnisotropy
- gtractCoRegAnatomy
- gtractConcatDwi
- gtractCopyImageOrientation
- gtractCoregBvalues
- gtractCostFastMarching
- gtractCreateGuideFiber
- gtractFastMarchingTracking
- gtractFiberTracking
- gtractImageConformity
- gtractInvertBSplineTransform
- gtractInvertDisplacementField
- gtractInvertRigidTransform
- gtractResampleAnisotropy
- gtractResampleB0
- gtractResampleCodeImage
- gtractResampleDWIInPlace
- gtractResampleFibers
- gtractTensor
- gtractTransformToDisplacementField
- nipype.interfaces.semtools.diffusion.maxcurvature module
- Subpackages
- nipype.interfaces.semtools.filtering package
- Submodules
- nipype.interfaces.semtools.filtering.denoising module
- nipype.interfaces.semtools.filtering.featuredetection module
- CannyEdge
- CannySegmentationLevelSetImageFilter
- DilateImage
- DilateMask
- DistanceMaps
- DumpBinaryTrainingVectors
- ErodeImage
- FlippedDifference
- GenerateBrainClippedImage
- GenerateSummedGradientImage
- GenerateTestImage
- GradientAnisotropicDiffusionImageFilter
- HammerAttributeCreator
- NeighborhoodMean
- NeighborhoodMedian
- STAPLEAnalysis
- TextureFromNoiseImageFilter
- TextureMeasureFilter
- Submodules
- nipype.interfaces.semtools.legacy package
- nipype.interfaces.semtools.registration package
- nipype.interfaces.semtools.segmentation package
- nipype.interfaces.semtools.testing package
- nipype.interfaces.semtools.utilities package
- Submodules
- nipype.interfaces.semtools.utilities.brains module
- BRAINSAlignMSP
- BRAINSClipInferior
- BRAINSConstellationModeler
- BRAINSEyeDetector
- BRAINSInitializedControlPoints
- BRAINSLandmarkInitializer
- BRAINSLinearModelerEPCA
- BRAINSLmkTransform
- BRAINSMush
- BRAINSSnapShotWriter
- BRAINSTransformConvert
- BRAINSTrimForegroundInDirection
- CleanUpOverlapLabels
- FindCenterOfBrain
- GenerateLabelMapFromProbabilityMap
- ImageRegionPlotter
- JointHistogram
- ShuffleVectorsModule
- fcsv_to_hdf5
- insertMidACPCpoint
- landmarksConstellationAligner
- landmarksConstellationWeights
- nipype.interfaces.semtools.utilities.brains module
- Submodules
- Submodules
- Subpackages
- nipype.interfaces.slicer package
- Subpackages
- nipype.interfaces.slicer.diffusion package
- nipype.interfaces.slicer.filtering package
- Submodules
- nipype.interfaces.slicer.filtering.arithmetic module
- nipype.interfaces.slicer.filtering.checkerboardfilter module
- nipype.interfaces.slicer.filtering.denoising module
- nipype.interfaces.slicer.filtering.extractskeleton module
- nipype.interfaces.slicer.filtering.histogrammatching module
- nipype.interfaces.slicer.filtering.imagelabelcombine module
- nipype.interfaces.slicer.filtering.morphology module
- nipype.interfaces.slicer.filtering.n4itkbiasfieldcorrection module
- nipype.interfaces.slicer.filtering.resamplescalarvectordwivolume module
- nipype.interfaces.slicer.filtering.thresholdscalarvolume module
- nipype.interfaces.slicer.filtering.votingbinaryholefillingimagefilter module
- Submodules
- nipype.interfaces.slicer.legacy package
- nipype.interfaces.slicer.quantification package
- nipype.interfaces.slicer.registration package
- nipype.interfaces.slicer.segmentation package
- Submodules
- Subpackages
- nipype.interfaces.spm package
- nipype.interfaces.utility package
- nipype.interfaces.vista package
- nipype.interfaces.workbench package
Submodules¶
- nipype.interfaces.bru2nii module
- nipype.interfaces.c3 module
- nipype.interfaces.dcm2nii module
- nipype.interfaces.dcmstack module
- nipype.interfaces.dynamic_slicer module
- nipype.interfaces.image module
- nipype.interfaces.io module
- nipype.interfaces.matlab module
- nipype.interfaces.meshfix module
- nipype.interfaces.nilearn module
- nipype.interfaces.petpvc module
- nipype.interfaces.quickshear module
- nipype.interfaces.vtkbase module