nipype.interfaces.freesurfer package

FreeSurfer is an open source software suite for processing and analyzing brain MRI images.

Submodules

• nipype.interfaces.freesurfer.base module
  • FSCommand
  • FSCommandOpenMP
  • FSScriptCommand
  • FSSurfaceCommand
• nipype.interfaces.freesurfer.longitudinal module
  • FuseSegmentations
  • RobustTemplate
• nipype.interfaces.freesurfer.model module
  • Binarize
  • Concatenate
  • GLMFit
  • Label2Annot
  • Label2Label
  • Label2Vol
  • MRISPreproc
  • MRISPreprocReconAll
  • MS_LDA
  • OneSampleTTest
  • SegStats
  • SegStatsReconAll
  • SphericalAverage
• nipype.interfaces.freesurfer.preprocess module
  • ApplyVolTransform
  • BBRegister
  • CALabel
  • CANormalize
  • CARegister
  • ConcatenateLTA
  • DICOMConvert
  • EditWMwithAseg
  • FitMSParams
  • MNIBiasCorrection
  • MRIConvert
  • MRIsCALabel
  • Normalize
  • ParseDICOMDir
  • ReconAll
  • Resample
  • RobustRegister
  • SegmentCC
  • SegmentWM
  • Smooth
  • SynthesizeFLASH
  • UnpackSDICOMDir
  • WatershedSkullStrip
• nipype.interfaces.freesurfer.registration module
  • EMRegister
  • MPRtoMNI305
  • MRICoreg
  • Paint
  • Register
  • RegisterAVItoTalairach
• nipype.interfaces.freesurfer.utils module
  • AddXFormToHeader
  • Aparc2Aseg
  • Apas2Aseg
  • ApplyMask
  • CheckTalairachAlignment
  • Contrast
  • Curvature
  • CurvatureStats
  • EulerNumber
  • ExtractMainComponent
  • FixTopology
  • ImageInfo
  • Jacobian
  • LTAConvert
  • MRIFill
  • MRIMarchingCubes
  • MRIPretess
  • MRITessellate
  • MRIsCalc
  • MRIsCombine
  • MRIsConvert
  • MRIsExpand
  • MRIsInflate
  • MakeAverageSubject
  • MakeSurfaces
  • ParcellationStats
  • RelabelHypointensities
  • RemoveIntersection
  • RemoveNeck
  • SampleToSurface
  • SmoothTessellation
  • Sphere
  • Surface2VolTransform
  • SurfaceSmooth
  • SurfaceSnapshots
  • SurfaceTransform
  • TalairachAVI
  • TalairachQC
  • Tkregister2
  • VolumeMask