nipype.interfaces.slicer package

3D Slicer is a platform for medical image informatics processing and visualization.

For an EXPERIMENTAL implementation of an interface for the 3dSlicer full framework, please check “dynamic” Slicer.

Subpackages

• nipype.interfaces.slicer.diffusion package
  • Submodules
    • nipype.interfaces.slicer.diffusion.diffusion module
      • DTIexport
      • DTIimport
      • DWIJointRicianLMMSEFilter
      • DWIRicianLMMSEFilter
      • DWIToDTIEstimation
      • DiffusionTensorScalarMeasurements
      • DiffusionWeightedVolumeMasking
      • ResampleDTIVolume
      • TractographyLabelMapSeeding
• nipype.interfaces.slicer.filtering package
  • Submodules
    • nipype.interfaces.slicer.filtering.arithmetic module
      • AddScalarVolumes
      • CastScalarVolume
      • MaskScalarVolume
      • MultiplyScalarVolumes
      • SubtractScalarVolumes
    • nipype.interfaces.slicer.filtering.checkerboardfilter module
      • CheckerBoardFilter
    • nipype.interfaces.slicer.filtering.denoising module
      • CurvatureAnisotropicDiffusion
      • GaussianBlurImageFilter
      • GradientAnisotropicDiffusion
      • MedianImageFilter
    • nipype.interfaces.slicer.filtering.extractskeleton module
      • ExtractSkeleton
    • nipype.interfaces.slicer.filtering.histogrammatching module
      • HistogramMatching
    • nipype.interfaces.slicer.filtering.imagelabelcombine module
      • ImageLabelCombine
    • nipype.interfaces.slicer.filtering.morphology module
      • GrayscaleFillHoleImageFilter
      • GrayscaleGrindPeakImageFilter
    • nipype.interfaces.slicer.filtering.n4itkbiasfieldcorrection module
      • N4ITKBiasFieldCorrection
    • nipype.interfaces.slicer.filtering.resamplescalarvectordwivolume module
      • ResampleScalarVectorDWIVolume
    • nipype.interfaces.slicer.filtering.thresholdscalarvolume module
      • ThresholdScalarVolume
    • nipype.interfaces.slicer.filtering.votingbinaryholefillingimagefilter module
      • VotingBinaryHoleFillingImageFilter
• nipype.interfaces.slicer.legacy package
  • Subpackages
    • nipype.interfaces.slicer.legacy.diffusion package
      • Submodules
        • nipype.interfaces.slicer.legacy.diffusion.denoising module
          • DWIUnbiasedNonLocalMeansFilter
  • Submodules
    • nipype.interfaces.slicer.legacy.converters module
      • BSplineToDeformationField
    • nipype.interfaces.slicer.legacy.filtering module
      • OtsuThresholdImageFilter
      • ResampleScalarVolume
    • nipype.interfaces.slicer.legacy.registration module
      • AffineRegistration
      • BSplineDeformableRegistration
      • ExpertAutomatedRegistration
      • LinearRegistration
      • MultiResolutionAffineRegistration
      • RigidRegistration
    • nipype.interfaces.slicer.legacy.segmentation module
      • OtsuThresholdSegmentation
• nipype.interfaces.slicer.quantification package
  • Submodules
    • nipype.interfaces.slicer.quantification.changequantification module
      • IntensityDifferenceMetric
    • nipype.interfaces.slicer.quantification.petstandarduptakevaluecomputation module
      • PETStandardUptakeValueComputation
• nipype.interfaces.slicer.registration package
  • Submodules
    • nipype.interfaces.slicer.registration.brainsfit module
      • BRAINSFit
    • nipype.interfaces.slicer.registration.brainsresample module
      • BRAINSResample
    • nipype.interfaces.slicer.registration.specialized module
      • ACPCTransform
      • BRAINSDemonWarp
      • FiducialRegistration
      • VBRAINSDemonWarp
• nipype.interfaces.slicer.segmentation package
  • Submodules
    • nipype.interfaces.slicer.segmentation.simpleregiongrowingsegmentation module
      • SimpleRegionGrowingSegmentation
    • nipype.interfaces.slicer.segmentation.specialized module
      • BRAINSROIAuto
      • EMSegmentCommandLine
      • RobustStatisticsSegmenter

Submodules

• nipype.interfaces.slicer.base module
  • SlicerCommandLine
• nipype.interfaces.slicer.converters module
  • DicomToNrrdConverter
  • OrientScalarVolume
• nipype.interfaces.slicer.generate_classes module
• nipype.interfaces.slicer.surface module
  • GrayscaleModelMaker
  • LabelMapSmoothing
  • MergeModels
  • ModelMaker
  • ModelToLabelMap
  • ProbeVolumeWithModel
• nipype.interfaces.slicer.utilities module
  • EMSegmentTransformToNewFormat