nipype.interfaces.semtools package

SEM Tools are useful tools for Structural Equation Modeling.

Subpackages

• nipype.interfaces.semtools.brains package
  • Submodules
    • nipype.interfaces.semtools.brains.classify module
      • BRAINSPosteriorToContinuousClass
    • nipype.interfaces.semtools.brains.segmentation module
      • BRAINSTalairach
      • BRAINSTalairachMask
      • SimilarityIndex
    • nipype.interfaces.semtools.brains.utilities module
      • GenerateEdgeMapImage
      • GeneratePurePlugMask
      • HistogramMatchingFilter
• nipype.interfaces.semtools.diffusion package
  • Subpackages
    • nipype.interfaces.semtools.diffusion.tractography package
      • Submodules
        • nipype.interfaces.semtools.diffusion.tractography.commandlineonly module
          • fiberstats
        • nipype.interfaces.semtools.diffusion.tractography.fiberprocess module
          • fiberprocess
        • nipype.interfaces.semtools.diffusion.tractography.fibertrack module
          • fibertrack
        • nipype.interfaces.semtools.diffusion.tractography.ukftractography module
          • UKFTractography
  • Submodules
    • nipype.interfaces.semtools.diffusion.diffusion module
      • DWIConvert
      • dtiaverage
      • dtiestim
      • dtiprocess
    • nipype.interfaces.semtools.diffusion.gtract module
      • compareTractInclusion
      • extractNrrdVectorIndex
      • gtractAnisotropyMap
      • gtractAverageBvalues
      • gtractClipAnisotropy
      • gtractCoRegAnatomy
      • gtractConcatDwi
      • gtractCopyImageOrientation
      • gtractCoregBvalues
      • gtractCostFastMarching
      • gtractCreateGuideFiber
      • gtractFastMarchingTracking
      • gtractFiberTracking
      • gtractImageConformity
      • gtractInvertBSplineTransform
      • gtractInvertDisplacementField
      • gtractInvertRigidTransform
      • gtractResampleAnisotropy
      • gtractResampleB0
      • gtractResampleCodeImage
      • gtractResampleDWIInPlace
      • gtractResampleFibers
      • gtractTensor
      • gtractTransformToDisplacementField
    • nipype.interfaces.semtools.diffusion.maxcurvature module
      • maxcurvature
• nipype.interfaces.semtools.filtering package
  • Submodules
    • nipype.interfaces.semtools.filtering.denoising module
      • UnbiasedNonLocalMeans
    • nipype.interfaces.semtools.filtering.featuredetection module
      • CannyEdge
      • CannySegmentationLevelSetImageFilter
      • DilateImage
      • DilateMask
      • DistanceMaps
      • DumpBinaryTrainingVectors
      • ErodeImage
      • FlippedDifference
      • GenerateBrainClippedImage
      • GenerateSummedGradientImage
      • GenerateTestImage
      • GradientAnisotropicDiffusionImageFilter
      • HammerAttributeCreator
      • NeighborhoodMean
      • NeighborhoodMedian
      • STAPLEAnalysis
      • TextureFromNoiseImageFilter
      • TextureMeasureFilter
• nipype.interfaces.semtools.legacy package
  • Submodules
    • nipype.interfaces.semtools.legacy.registration module
      • scalartransform
• nipype.interfaces.semtools.registration package
  • Submodules
    • nipype.interfaces.semtools.registration.brainsfit module
      • BRAINSFit
    • nipype.interfaces.semtools.registration.brainsresample module
      • BRAINSResample
    • nipype.interfaces.semtools.registration.brainsresize module
      • BRAINSResize
    • nipype.interfaces.semtools.registration.specialized module
      • BRAINSDemonWarp
      • BRAINSTransformFromFiducials
      • VBRAINSDemonWarp
• nipype.interfaces.semtools.segmentation package
  • Submodules
    • nipype.interfaces.semtools.segmentation.specialized module
      • BRAINSABC
      • BRAINSConstellationDetector
      • BRAINSCreateLabelMapFromProbabilityMaps
      • BRAINSCut
      • BRAINSMultiSTAPLE
      • BRAINSROIAuto
      • BinaryMaskEditorBasedOnLandmarks
      • ESLR
• nipype.interfaces.semtools.testing package
  • Submodules
    • nipype.interfaces.semtools.testing.featuredetection module
      • SphericalCoordinateGeneration
    • nipype.interfaces.semtools.testing.generateaveragelmkfile module
      • GenerateAverageLmkFile
    • nipype.interfaces.semtools.testing.landmarkscompare module
      • LandmarksCompare
• nipype.interfaces.semtools.utilities package
  • Submodules
    • nipype.interfaces.semtools.utilities.brains module
      • BRAINSAlignMSP
      • BRAINSClipInferior
      • BRAINSConstellationModeler
      • BRAINSEyeDetector
      • BRAINSInitializedControlPoints
      • BRAINSLandmarkInitializer
      • BRAINSLinearModelerEPCA
      • BRAINSLmkTransform
      • BRAINSMush
      • BRAINSSnapShotWriter
      • BRAINSTransformConvert
      • BRAINSTrimForegroundInDirection
      • CleanUpOverlapLabels
      • FindCenterOfBrain
      • GenerateLabelMapFromProbabilityMap
      • ImageRegionPlotter
      • JointHistogram
      • ShuffleVectorsModule
      • fcsv_to_hdf5
      • insertMidACPCpoint
      • landmarksConstellationAligner
      • landmarksConstellationWeights

Submodules

• nipype.interfaces.semtools.converters module
  • DWICompare
  • DWISimpleCompare
• nipype.interfaces.semtools.featurecreator module
  • GenerateCsfClippedFromClassifiedImage