nipype.interfaces.slicer.quantification.changequantification module

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IntensityDifferenceMetric

Link to code

Bases: SEMLikeCommandLine

Wrapped executable: IntensityDifferenceMetric.

title:

Intensity Difference Change Detection (FAST)

category:

Quantification.ChangeQuantification

description:

Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.

version: 0.1

contributor: Andrey Fedorov

acknowledgements:

Optional Inputs:

  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • baselineSegmentationVolume (a pathlike object or string representing an existing file) – Label volume that contains segmentation of the structure of interest in the baseline volume. Maps to a command-line argument: %s (position: -3).

  • baselineVolume (a pathlike object or string representing an existing file) – Baseline volume to be compared to. Maps to a command-line argument: %s (position: -4).

  • changingBandSize (an integer) – How far (in mm) from the boundary of the segmentation should the intensity changes be considered. Maps to a command-line argument: --changingBandSize %d.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

  • followupVolume (a pathlike object or string representing an existing file) – Followup volume to be compare to the baseline. Maps to a command-line argument: %s (position: -2).

  • outputVolume (a boolean or a pathlike object or string representing a file) – Output volume to keep the results of change quantification. Maps to a command-line argument: %s (position: -1).

  • reportFileName (a boolean or a pathlike object or string representing a file) – Report file name. Maps to a command-line argument: --reportFileName %s.

  • sensitivityThreshold (a float) – This parameter should be between 0 and 1, and defines how sensitive the metric should be to the intensity changes. Maps to a command-line argument: --sensitivityThreshold %f.

Outputs:

  • outputVolume (a pathlike object or string representing an existing file) – Output volume to keep the results of change quantification.

  • reportFileName (a pathlike object or string representing an existing file) – Report file name.