nipype.interfaces.slicer.filtering.votingbinaryholefillingimagefilter module

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VotingBinaryHoleFillingImageFilter

Link to code

Bases: SEMLikeCommandLine

Wrapped executable: VotingBinaryHoleFillingImageFilter.

title: Voting Binary Hole Filling Image Filter

category: Filtering

description: Applies a voting operation in order to fill-in cavities. This can be used for smoothing contours and for filling holes in binary images. This technique is used frequently when segmenting complete organs that may have ducts or vasculature that may not have been included in the initial segmentation, e.g. lungs, kidneys, liver.

version: 0.1.0.$Revision: 19608 $(alpha)

documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/VotingBinaryHoleFillingImageFilter

contributor: Bill Lorensen (GE)

acknowledgements: This command module was derived from Insight/Examples/Filtering/VotingBinaryHoleFillingImageFilter (copyright) Insight Software Consortium

Optional Inputs:

  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • background (an integer) – The value associated with the background (not object). Maps to a command-line argument: --background %d.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

  • foreground (an integer) – The value associated with the foreground (object). Maps to a command-line argument: --foreground %d.

  • inputVolume (a pathlike object or string representing an existing file) – Input volume to be filtered. Maps to a command-line argument: %s (position: -2).

  • majorityThreshold (an integer) – The number of pixels over 50% that will decide whether an OFF pixel will become ON or not. For example, if the neighborhood of a pixel has 124 pixels (excluding itself), the 50% will be 62, and if you set a Majority threshold of 5, that means that the filter will require 67 or more neighbor pixels to be ON in order to switch the current OFF pixel to ON. Maps to a command-line argument: --majorityThreshold %d.

  • outputVolume (a boolean or a pathlike object or string representing a file) – Output filtered. Maps to a command-line argument: %s (position: -1).

  • radius (a list of items which are an integer) – The radius of a hole to be filled. Maps to a command-line argument: --radius %s.

Outputs:

outputVolume (a pathlike object or string representing an existing file) – Output filtered.