nipype.interfaces.semtools.converters module

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DWICompare

Link to code

Bases: SEMLikeCommandLine

Wrapped executable: DWICompare.

title: Nrrd DWI comparison

category: Converters

description: Compares two nrrd format DWI images and verifies that gradient magnitudes, gradient directions, measurement frame, and max B0 value are identicle. Used for testing DWIConvert.

version: 0.1.0.$Revision: 916 $(alpha)

documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DWIConvert

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Mark Scully (UIowa)

acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Additional support for DTI data produced on Philips scanners was contributed by Vincent Magnotta and Hans Johnson at the University of Iowa.

Optional Inputs:

  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

  • inputVolume1 (a pathlike object or string representing an existing file) – First input volume (.nhdr or .nrrd). Maps to a command-line argument: --inputVolume1 %s.

  • inputVolume2 (a pathlike object or string representing an existing file) – Second input volume (.nhdr or .nrrd). Maps to a command-line argument: --inputVolume2 %s.

DWISimpleCompare

Link to code

Bases: SEMLikeCommandLine

Wrapped executable: DWISimpleCompare.

title: Nrrd DWI comparison

category: Converters

description: Compares two nrrd format DWI images and verifies that gradient magnitudes, gradient directions, measurement frame, and max B0 value are identicle. Used for testing DWIConvert.

version: 0.1.0.$Revision: 916 $(alpha)

documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DWIConvert

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Mark Scully (UIowa)

acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Additional support for DTI data produced on Philips scanners was contributed by Vincent Magnotta and Hans Johnson at the University of Iowa.

Optional Inputs:

  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • checkDWIData (a boolean) – Check for existence of DWI data, and if present, compare it. Maps to a command-line argument: --checkDWIData.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

  • inputVolume1 (a pathlike object or string representing an existing file) – First input volume (.nhdr or .nrrd). Maps to a command-line argument: --inputVolume1 %s.

  • inputVolume2 (a pathlike object or string representing an existing file) – Second input volume (.nhdr or .nrrd). Maps to a command-line argument: --inputVolume2 %s.