nipype.interfaces.semtools.brains.classify module

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BRAINSPosteriorToContinuousClass

Link to code

Bases: SEMLikeCommandLine

Wrapped executable: BRAINSPosteriorToContinuousClass.

title: Tissue Classification

category: BRAINS.Classify

description: This program will generate an 8-bit continuous tissue classified image based on BRAINSABC posterior images.

version: 3.0

documentation-url: http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSClassify

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Vincent A. Magnotta

acknowledgements: Funding for this work was provided by NIH/NINDS award NS050568

Optional Inputs:

  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

  • inputBasalGmVolume (a pathlike object or string representing an existing file) – Basal Grey Matter Posterior Volume. Maps to a command-line argument: --inputBasalGmVolume %s.

  • inputCrblGmVolume (a pathlike object or string representing an existing file) – Cerebellum Grey Matter Posterior Volume. Maps to a command-line argument: --inputCrblGmVolume %s.

  • inputCrblWmVolume (a pathlike object or string representing an existing file) – Cerebellum White Matter Posterior Volume. Maps to a command-line argument: --inputCrblWmVolume %s.

  • inputCsfVolume (a pathlike object or string representing an existing file) – CSF Posterior Volume. Maps to a command-line argument: --inputCsfVolume %s.

  • inputSurfaceGmVolume (a pathlike object or string representing an existing file) – Surface Grey Matter Posterior Volume. Maps to a command-line argument: --inputSurfaceGmVolume %s.

  • inputVbVolume (a pathlike object or string representing an existing file) – Venous Blood Posterior Volume. Maps to a command-line argument: --inputVbVolume %s.

  • inputWhiteVolume (a pathlike object or string representing an existing file) – White Matter Posterior Volume. Maps to a command-line argument: --inputWhiteVolume %s.

  • outputVolume (a boolean or a pathlike object or string representing a file) – Output Continuous Tissue Classified Image. Maps to a command-line argument: --outputVolume %s.

Outputs:

outputVolume (a pathlike object or string representing an existing file) – Output Continuous Tissue Classified Image.