nipype.interfaces.niftyseg.base module

The niftyseg module provides classes for interfacing with niftyseg command line tools. These are the base tools for working with niftyseg. EM Statistical Segmentation tool is found in niftyseg/em.py Fill lesions tool is found in niftyseg/lesions.py Mathematical operation tool is found in niftyseg/maths.py Patch Match tool is found in niftyseg/patchmatch.py Statistical operation tool is found in niftyseg/stats.py Label Fusion and CalcTopNcc tools are in niftyseg/steps.py .. rubric:: Examples

See the docstrings of the individual classes for examples.

NiftySegCommand

Link to code

Bases: NiftyFitCommand

Base support interface for NiftySeg commands.

Optional Inputs:
  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

NiftySegCommand.get_version()