nipype.interfaces.ants.base module

The ants module provides basic functions for interfacing with ANTS tools.

ANTSCommand

Link to code

Bases: CommandLine

Base class for ANTS interfaces

Optional Inputs:

  • args (a string) – Additional parameters to the command. Maps to a command-line argument: %s.

  • environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value: {})

  • num_threads (an integer) – Number of ITK threads to use. (Nipype default value: 1)

classmethod ANTSCommand.set_default_num_threads(num_threads)

Set the default number of threads for ITK calls

This method is used to set the default number of ITK threads for all the ANTS interfaces. However, setting this will not update the output type for any existing instances. For these, assign the <instance>.inputs.num_threads

property ANTSCommand.version

interfaces should implement a version property

class nipype.interfaces.ants.base.Info

Bases: nipype.interfaces.base.core.PackageInfo

static parse_version(raw_info)
version_cmd = 'antsRegistration --version'