interfaces.slicer.quantification.petstandarduptakevaluecomputation

PETStandardUptakeValueComputation

Link to code

Wraps the executable command ``PETStandardUptakeValueComputation ``.

title: PET Standard Uptake Value Computation

category: Quantification

description: Computes the standardized uptake value based on body weight. Takes an input PET image in DICOM and NRRD format (DICOM header must contain Radiopharmaceutical parameters). Produces a CSV file that contains patientID, studyDate, dose, labelID, suvmin, suvmax, suvmean, labelName for each volume of interest. It also displays some of the information as output strings in the GUI, the CSV file is optional in that case. The CSV file is appended to on each execution of the CLI.

version: 0.1.0.$Revision: 8595 $(alpha)

documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/ComputeSUVBodyWeight

contributor: Wendy Plesniak (SPL, BWH), Nicole Aucoin (SPL, BWH), Ron Kikinis (SPL, BWH)

acknowledgements: This work is funded by the Harvard Catalyst, and the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.

Inputs:

[Optional]
petDICOMPath: (an existing directory name)
        Input path to a directory containing a PET volume containing DICOM
        header information for SUV computation
        argument: ``--petDICOMPath %s``
petVolume: (an existing file name)
        Input PET volume for SUVbw computation (must be the same volume as
        pointed to by the DICOM path!).
        argument: ``--petVolume %s``
labelMap: (an existing file name)
        Input label volume containing the volumes of interest
        argument: ``--labelMap %s``
color: (an existing file name)
        Color table to to map labels to colors and names
        argument: ``--color %s``
csvFile: (a boolean or a file name)
        A file holding the output SUV values in comma separated lines, one
        per label. Optional.
        argument: ``--csvFile %s``
OutputLabel: (a unicode string)
        List of labels for which SUV values were computed
        argument: ``--OutputLabel %s``
OutputLabelValue: (a unicode string)
        List of label values for which SUV values were computed
        argument: ``--OutputLabelValue %s``
SUVMax: (a unicode string)
        SUV max for each label
        argument: ``--SUVMax %s``
SUVMean: (a unicode string)
        SUV mean for each label
        argument: ``--SUVMean %s``
SUVMin: (a unicode string)
        SUV minimum for each label
        argument: ``--SUVMin %s``
args: (a unicode string)
        Additional parameters to the command
        argument: ``%s``
environ: (a dictionary with keys which are a bytes or None or a value
          of class 'str' and with values which are a bytes or None or a
          value of class 'str', nipype default value: {})
        Environment variables

Outputs:

csvFile: (an existing file name)
        A file holding the output SUV values in comma separated lines, one
        per label. Optional.