interfaces.semtools.converters

DWICompare

Link to code

Wraps the executable command `` DWICompare ``.

title: Nrrd DWI comparison

category: Converters

description: Compares two nrrd format DWI images and verifies that gradient magnitudes, gradient directions, measurement frame, and max B0 value are identicle. Used for testing DWIConvert.

version: 0.1.0.$Revision: 916 $(alpha)

documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DWIConvert

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Mark Scully (UIowa)

acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Additional support for DTI data produced on Philips scanners was contributed by Vincent Magnotta and Hans Johnson at the University of Iowa.

Inputs:

[Optional]
inputVolume1: (an existing file name)
        First input volume (.nhdr or .nrrd)
        argument: ``--inputVolume1 %s``
inputVolume2: (an existing file name)
        Second input volume (.nhdr or .nrrd)
        argument: ``--inputVolume2 %s``
args: (a unicode string)
        Additional parameters to the command
        argument: ``%s``
environ: (a dictionary with keys which are a bytes or None or a value
          of class 'str' and with values which are a bytes or None or a
          value of class 'str', nipype default value: {})
        Environment variables

Outputs:

None

DWISimpleCompare

Link to code

Wraps the executable command `` DWISimpleCompare ``.

title: Nrrd DWI comparison

category: Converters

description: Compares two nrrd format DWI images and verifies that gradient magnitudes, gradient directions, measurement frame, and max B0 value are identicle. Used for testing DWIConvert.

version: 0.1.0.$Revision: 916 $(alpha)

documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DWIConvert

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Mark Scully (UIowa)

acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Additional support for DTI data produced on Philips scanners was contributed by Vincent Magnotta and Hans Johnson at the University of Iowa.

Inputs:

[Optional]
inputVolume1: (an existing file name)
        First input volume (.nhdr or .nrrd)
        argument: ``--inputVolume1 %s``
inputVolume2: (an existing file name)
        Second input volume (.nhdr or .nrrd)
        argument: ``--inputVolume2 %s``
checkDWIData: (a boolean)
        check for existence of DWI data, and if present, compare it
        argument: ``--checkDWIData ``
args: (a unicode string)
        Additional parameters to the command
        argument: ``%s``
environ: (a dictionary with keys which are a bytes or None or a value
          of class 'str' and with values which are a bytes or None or a
          value of class 'str', nipype default value: {})
        Environment variables

Outputs:

None