interfaces.semtools.brains.classify

BRAINSPosteriorToContinuousClass

Link to code

Wraps the executable command `` BRAINSPosteriorToContinuousClass ``.

title: Tissue Classification

category: BRAINS.Classify

description: This program will generate an 8-bit continuous tissue classified image based on BRAINSABC posterior images.

version: 3.0

documentation-url: http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSClassify

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Vincent A. Magnotta

acknowledgements: Funding for this work was provided by NIH/NINDS award NS050568

Inputs:

[Optional]
inputWhiteVolume: (an existing file name)
        White Matter Posterior Volume
        argument: ``--inputWhiteVolume %s``
inputBasalGmVolume: (an existing file name)
        Basal Grey Matter Posterior Volume
        argument: ``--inputBasalGmVolume %s``
inputSurfaceGmVolume: (an existing file name)
        Surface Grey Matter Posterior Volume
        argument: ``--inputSurfaceGmVolume %s``
inputCsfVolume: (an existing file name)
        CSF Posterior Volume
        argument: ``--inputCsfVolume %s``
inputVbVolume: (an existing file name)
        Venous Blood Posterior Volume
        argument: ``--inputVbVolume %s``
inputCrblGmVolume: (an existing file name)
        Cerebellum Grey Matter Posterior Volume
        argument: ``--inputCrblGmVolume %s``
inputCrblWmVolume: (an existing file name)
        Cerebellum White Matter Posterior Volume
        argument: ``--inputCrblWmVolume %s``
outputVolume: (a boolean or a file name)
        Output Continuous Tissue Classified Image
        argument: ``--outputVolume %s``
args: (a unicode string)
        Additional parameters to the command
        argument: ``%s``
environ: (a dictionary with keys which are a bytes or None or a value
          of class 'str' and with values which are a bytes or None or a
          value of class 'str', nipype default value: {})
        Environment variables

Outputs:

outputVolume: (an existing file name)
        Output Continuous Tissue Classified Image