interfaces.semtools.brains.utilities

HistogramMatchingFilter

Link to code

Wraps command ** HistogramMatchingFilter **

title: Write Out Image Intensities

category: BRAINS.Utilities

description: For Analysis

version: 0.1

contributor: University of Iowa Department of Psychiatry, http:://www.psychiatry.uiowa.edu

Inputs:

[Mandatory]

[Optional]
args: (a string)
        Additional parameters to the command
        flag: %s
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
histogramAlgorithm: ('OtsuHistogramMatching')
         histogram algrithm selection
        flag: --histogramAlgorithm %s
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
inputBinaryVolume: (an existing file name)
        inputBinaryVolume
        flag: --inputBinaryVolume %s
inputVolume: (an existing file name)
        The Input image to be computed for statistics
        flag: --inputVolume %s
numberOfHistogramBins: (an integer (int or long))
         number of histogram bin
        flag: --numberOfHistogramBins %d
numberOfMatchPoints: (an integer (int or long))
         number of histogram matching points
        flag: --numberOfMatchPoints %d
outputVolume: (a boolean or a file name)
        Output Image File Name
        flag: --outputVolume %s
referenceBinaryVolume: (an existing file name)
        referenceBinaryVolume
        flag: --referenceBinaryVolume %s
referenceVolume: (an existing file name)
        The Input image to be computed for statistics
        flag: --referenceVolume %s
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal immediately
        (default), `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored
verbose: (a boolean)
         verbose mode running for debbuging
        flag: --verbose
writeHistogram: (a string)
         decide if histogram data would be written with prefixe of the file
        name
        flag: --writeHistogram %s

Outputs:

outputVolume: (an existing file name)
        Output Image File Name