interfaces.semtools.brains.classify

BRAINSPosteriorToContinuousClass

Link to code

Wraps command ** BRAINSPosteriorToContinuousClass **

title: Tissue Classification

category: BRAINS.Classify

description: This program will generate an 8-bit continuous tissue classified image based on BRAINSABC posterior images.

version: 3.0

documentation-url: http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSClassify

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Vincent A. Magnotta

acknowledgements: Funding for this work was provided by NIH/NINDS award NS050568

Inputs:

[Mandatory]

[Optional]
args: (a string)
        Additional parameters to the command
        flag: %s
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
inputBasalGmVolume: (an existing file name)
        Basal Grey Matter Posterior Volume
        flag: --inputBasalGmVolume %s
inputCrblGmVolume: (an existing file name)
        Cerebellum Grey Matter Posterior Volume
        flag: --inputCrblGmVolume %s
inputCrblWmVolume: (an existing file name)
        Cerebellum White Matter Posterior Volume
        flag: --inputCrblWmVolume %s
inputCsfVolume: (an existing file name)
        CSF Posterior Volume
        flag: --inputCsfVolume %s
inputSurfaceGmVolume: (an existing file name)
        Surface Grey Matter Posterior Volume
        flag: --inputSurfaceGmVolume %s
inputVbVolume: (an existing file name)
        Venous Blood Posterior Volume
        flag: --inputVbVolume %s
inputWhiteVolume: (an existing file name)
        White Matter Posterior Volume
        flag: --inputWhiteVolume %s
outputVolume: (a boolean or a file name)
        Output Continuous Tissue Classified Image
        flag: --outputVolume %s
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal immediately
        (default), `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

Outputs:

outputVolume: (an existing file name)
        Output Continuous Tissue Classified Image