nipype.interfaces.fsl package

FSL is a comprehensive library of analysis tools for fMRI, MRI and DTI brain imaging data.

The fsl module provides classes for interfacing with the FSL command line tools.

Submodules

• nipype.interfaces.fsl.aroma module
  • ICA_AROMA
• nipype.interfaces.fsl.base module
  • FSLCommand
• nipype.interfaces.fsl.dti module
  • BEDPOSTX
  • BEDPOSTX5
  • DTIFit
  • DistanceMap
  • FSLXCommand
  • FindTheBiggest
  • MakeDyadicVectors
  • ProbTrackX
  • ProbTrackX2
  • ProjThresh
  • TractSkeleton
  • VecReg
  • XFibres
  • XFibres5
• nipype.interfaces.fsl.epi module
  • ApplyTOPUP
  • EPIDeWarp
  • Eddy
  • EddyCorrect
  • EddyQuad
  • EpiReg
  • PrepareFieldmap
  • SigLoss
  • TOPUP
• nipype.interfaces.fsl.fix module
  • Classifier
  • Cleaner
  • FeatureExtractor
  • Training
  • TrainingSetCreator
• nipype.interfaces.fsl.maths module
  • AR1Image
  • ApplyMask
  • BinaryMaths
  • ChangeDataType
  • DilateImage
  • ErodeImage
  • IsotropicSmooth
  • MathsCommand
  • MaxImage
  • MaxnImage
  • MeanImage
  • MedianImage
  • MinImage
  • MultiImageMaths
  • PercentileImage
  • SpatialFilter
  • StdImage
  • TemporalFilter
  • Threshold
  • UnaryMaths
• nipype.interfaces.fsl.model module
  • Cluster
  • ContrastMgr
  • DualRegression
  • FEAT
  • FEATModel
  • FEATRegister
  • FILMGLS
  • FLAMEO
  • GLM
  • L2Model
  • Level1Design
  • MELODIC
  • MultipleRegressDesign
  • Randomise
  • SMM
  • SmoothEstimate
• nipype.interfaces.fsl.possum module
  • B0Calc
• nipype.interfaces.fsl.preprocess module
  • ApplyWarp
  • ApplyXFM
  • BET
  • FAST
  • FIRST
  • FLIRT
  • FNIRT
  • FUGUE
  • MCFLIRT
  • PRELUDE
  • SUSAN
  • SliceTimer
• nipype.interfaces.fsl.utils module
  • AvScale
  • Complex
  • ConvertWarp
  • ConvertXFM
  • CopyGeom
  • ExtractROI
  • FilterRegressor
  • ImageMaths
  • ImageMeants
  • ImageStats
  • InvWarp
  • Merge
  • MotionOutliers
  • Overlay
  • PlotMotionParams
  • PlotTimeSeries
  • PowerSpectrum
  • Reorient2Std
  • RobustFOV
  • SigLoss
  • Slice
  • Slicer
  • Smooth
  • Split
  • SwapDimensions
  • WarpPoints
  • WarpPointsFromStd
  • WarpPointsToStd
  • WarpUtils