nipype.pipeline.plugins.condor module¶
Parallel workflow execution via Condor
-
class
nipype.pipeline.plugins.condor.
CondorPlugin
(**kwargs)¶ Bases:
nipype.pipeline.plugins.base.SGELikeBatchManagerBase
Execute using Condor
This plugin doesn’t work with a plain stock-Condor installation, but requires a ‘qsub’ emulation script for Condor, called ‘condor_qsub’. This script is shipped with the Condor package from NeuroDebian, or can be downloaded from its Git repository at
http://anonscm.debian.org/gitweb/?p=pkg-exppsy/condor.git;a=blob_plain;f=debian/condor_qsub;hb=HEAD
The plugin_args input to run can be used to control the Condor execution. Currently supported options are:
- templatetemplate to use for batch job submission. This can be an
SGE-style script with the (limited) set of options supported by condor_qsub
- qsub_argsarguments to be prepended to the job execution script in the
qsub call