interfaces.slicer.segmentation.simpleregiongrowingsegmentation¶
SimpleRegionGrowingSegmentation¶
Wraps the executable command ``SimpleRegionGrowingSegmentation ``.
title: Simple Region Growing Segmentation
category: Segmentation
description: A simple region growing segmentation algorithm based on intensity statistics. To create a list of fiducials (Seeds) for this algorithm, click on the tool bar icon of an arrow pointing to a starburst fiducial to enter the ‘place a new object mode’ and then use the fiducials module. This module uses the Slicer Command Line Interface (CLI) and the ITK filters CurvatureFlowImageFilter and ConfidenceConnectedImageFilter.
version: 0.1.0.$Revision: 19904 $(alpha)
documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/SimpleRegionGrowingSegmentation
contributor: Jim Miller (GE)
acknowledgements: This command module was derived from Insight/Examples (copyright) Insight Software Consortium
Inputs:
[Optional]
smoothingIterations: (an integer (int or long))
Number of smoothing iterations
argument: ``--smoothingIterations %d``
timestep: (a float)
Timestep for curvature flow
argument: ``--timestep %f``
iterations: (an integer (int or long))
Number of iterations of region growing
argument: ``--iterations %d``
multiplier: (a float)
Number of standard deviations to include in intensity model
argument: ``--multiplier %f``
neighborhood: (an integer (int or long))
The radius of the neighborhood over which to calculate intensity
model
argument: ``--neighborhood %d``
labelvalue: (an integer (int or long))
The integer value (0-255) to use for the segmentation results. This
will determine the color of the segmentation that will be generated
by the Region growing algorithm
argument: ``--labelvalue %d``
seed: (a list of items which are a list of from 3 to 3 items which
are a float)
Seed point(s) for region growing
argument: ``--seed %s...``
inputVolume: (a pathlike object or string representing an existing
file)
Input volume to be filtered
argument: ``%s``, position: -2
outputVolume: (a boolean or a pathlike object or string representing
a file)
Output filtered
argument: ``%s``, position: -1
args: (a unicode string)
Additional parameters to the command
argument: ``%s``
environ: (a dictionary with keys which are a bytes or None or a value
of class 'str' and with values which are a bytes or None or a
value of class 'str', nipype default value: {})
Environment variables
Outputs:
outputVolume: (a pathlike object or string representing an existing
file)
Output filtered