interfaces.bru2nii¶
Bru2¶
Wraps the executable command Bru2
.
Uses bru2nii’s Bru2 to convert Bruker files
Examples¶
>>> from nipype.interfaces.bru2nii import Bru2
>>> converter = Bru2()
>>> converter.inputs.input_dir = "brukerdir"
>>> converter.cmdline
'Bru2 -o .../data/brukerdir brukerdir'
Inputs:
[Mandatory]
input_dir: (an existing directory name)
Input Directory
argument: ``%s``, position: -1
[Optional]
force_conversion: (a boolean)
Force conversion of localizers images (multiple slice orientations).
argument: ``-f``
compress: (a boolean)
gz compress images (".nii.gz").
argument: ``-z``
append_protocol_name: (a boolean)
Append protocol name to output filename.
argument: ``-p``
output_filename: (a unicode string)
Output filename (".nii" will be appended, or ".nii.gz" if the "-z"
compress option is selected)
argument: ``-o %s``
actual_size: (a boolean)
Keep actual size - otherwise x10 scale so animals match human.
argument: ``-a``
args: (a unicode string)
Additional parameters to the command
argument: ``%s``
environ: (a dictionary with keys which are a bytes or None or a value
of class 'str' and with values which are a bytes or None or a
value of class 'str', nipype default value: {})
Environment variables
Outputs:
nii_file: (an existing file name)