About¶
Citation¶
Reference
Gorgolewski, Krzysztof J.; Esteban, Oscar; Ellis, David Gage; Notter, Michael Philipp; Ziegler, Erik; Johnson, Hans; Hamalainen, Carlo; Yvernault, Benjamin; Burns, Christopher; Manhães-Savio, Alexandre; Jarecka, Dorota; Markiewicz, Christopher J.; Salo, Taylor; Clark, Daniel; Waskom, Michael; Wong, Jason; Modat, Marc; Dewey, Blake E; Clark, Michael G.; Dayan, Michael; Loney, Fred; Madison, Cindee; Gramfort, Alexandre; Keshavan, Anisha; Berleant, Shoshana; Pinsard, Basile; Goncalves, Mathias; Clark, Dav; Cipollini, Ben; Varoquaux, Gael; Wassermann , Demian; Rokem, Ariel; Halchenko, Yaroslav O.; Forbes, Jessica; Moloney, Brendan; Malone, Ian B.; Hanke, Michael; Mordom, David; Buchanan, Colin; PAULI, WOLFGANG M.; Huntenburg, Julia M.; Horea, Christian; Schwartz, Yannick; Tungaraza, Rosalia; Iqbal, Shariq; Kleesiek, Jens; Sikka, Sharad; Frohlich, Caroline; Kent, James; Perez-Guevara, Martin; Watanabe, Aimi; Welch, David; Cumba, Chad; Ginsburg, Daniel; Eshaghi, Arman; Kastman, Erik; Bougacha, Salma; Blair, Ross; Acland, Benjamin; Gillman, Ashley; Schaefer, Alexander; Nichols, B. Nolan; Giavasis, Steven; Erickson, Drew; Correa, Carlos; Ghayoor, Ali; Küttner, René; Haselgrove, Christian; Zhou, Dale; Craddock, R. Cameron; Haehn, Daniel; Lampe, Leonie; Millman, Jarrod; Lai, Jeff; Renfro, Mandy; Liu, Siqi; Stadler, Jörg; Glatard, Tristan; Kahn, Ari E.; Kong, Xiang-Zhen; Triplett, William; Park, Anne; McDermottroe, Conor; Hallquist, Michael; Poldrack, Russell; Perkins, L. Nathan; Noel, Maxime; Gerhard, Stephan; Salvatore, John; Mertz, Fred; Broderick, William; Inati, Souheil; Hinds, Oliver; Brett, Matthew; Durnez, Joke; Tambini, Arielle; Rothmei, Simon; Andberg, Sami Kristian; Cooper, Gavin; Marina, Ana; Mattfeld, Aaron; Urchs, Sebastian; Sharp, Paul; Matsubara, K; Geisler, Daniel; Cheung, Brian; Floren, Andrew; Nickson, Thomas; Pannetier, Nicolas; Weinstein, Alejandro; Dubois, Mathieu; Arias, Jaime; Tarbert, Claire; Schlamp, Kai; Jordan, Kesshi; Liem, Franz; Saase, Victor; Harms, Robbert; Khanuja, Ranjeet; Podranski, Kornelius; Flandin, Guillaume; Papadopoulos Orfanos, Dimitri; Schwabacher, Isaac; McNamee, Daniel; Falkiewicz, Marcel; Pellman, John; Linkersdörfer, Janosch; Varada, Jan; Pérez-García, Fernando; Davison, Andrew; Shachnev, Dmitry; Ghosh, Satrajit (2017). Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.0 Zenodo. 10.5281/zenodo.581704
@misc{gorgolewski_krzysztof_j_2017_581704,
author = {Gorgolewski, Krzysztof J. and
Esteban, Oscar and
Ellis, David Gage and
Notter, Michael Philipp and
Ziegler, Erik and
Johnson, Hans and
Hamalainen, Carlo and
Yvernault, Benjamin and
Burns, Christopher and
Manhães-Savio, Alexandre and
Jarecka, Dorota and
Markiewicz, Christopher J. and
Salo, Taylor and
Clark, Daniel and
Waskom, Michael and
Wong, Jason and
Modat, Marc and
Dewey, Blake E and
Clark, Michael G. and
Dayan, Michael and
Loney, Fred and
Madison, Cindee and
Gramfort, Alexandre and
Keshavan, Anisha and
Berleant, Shoshana and
Pinsard, Basile and
Goncalves, Mathias and
Clark, Dav and
Cipollini, Ben and
Varoquaux, Gael and
Wassermann , Demian and
Rokem, Ariel and
Halchenko, Yaroslav O. and
Forbes, Jessica and
Moloney, Brendan and
Malone, Ian B. and
Hanke, Michael and
Mordom, David and
Buchanan, Colin and
PAULI, WOLFGANG M. and
Huntenburg, Julia M. and
Horea, Christian and
Schwartz, Yannick and
Tungaraza, Rosalia and
Iqbal, Shariq and
Kleesiek, Jens and
Sikka, Sharad and
Frohlich, Caroline and
Kent, James and
Perez-Guevara, Martin and
Watanabe, Aimi and
Welch, David and
Cumba, Chad and
Ginsburg, Daniel and
Eshaghi, Arman and
Kastman, Erik and
Bougacha, Salma and
Blair, Ross and
Acland, Benjamin and
Gillman, Ashley and
Schaefer, Alexander and
Nichols, B. Nolan and
Giavasis, Steven and
Erickson, Drew and
Correa, Carlos and
Ghayoor, Ali and
Küttner, René and
Haselgrove, Christian and
Zhou, Dale and
Craddock, R. Cameron and
Haehn, Daniel and
Lampe, Leonie and
Millman, Jarrod and
Lai, Jeff and
Renfro, Mandy and
Liu, Siqi and
Stadler, Jörg and
Glatard, Tristan and
Kahn, Ari E. and
Kong, Xiang-Zhen and
Triplett, William and
Park, Anne and
McDermottroe, Conor and
Hallquist, Michael and
Poldrack, Russell and
Perkins, L. Nathan and
Noel, Maxime and
Gerhard, Stephan and
Salvatore, John and
Mertz, Fred and
Broderick, William and
Inati, Souheil and
Hinds, Oliver and
Brett, Matthew and
Durnez, Joke and
Tambini, Arielle and
Rothmei, Simon and
Andberg, Sami Kristian and
Cooper, Gavin and
Marina, Ana and
Mattfeld, Aaron and
Urchs, Sebastian and
Sharp, Paul and
Matsubara, K and
Geisler, Daniel and
Cheung, Brian and
Floren, Andrew and
Nickson, Thomas and
Pannetier, Nicolas and
Weinstein, Alejandro and
Dubois, Mathieu and
Arias, Jaime and
Tarbert, Claire and
Schlamp, Kai and
Jordan, Kesshi and
Liem, Franz and
Saase, Victor and
Harms, Robbert and
Khanuja, Ranjeet and
Podranski, Kornelius and
Flandin, Guillaume and
Papadopoulos Orfanos, Dimitri and
Schwabacher, Isaac and
McNamee, Daniel and
Falkiewicz, Marcel and
Pellman, John and
Linkersdörfer, Janosch and
Varada, Jan and
Pérez-García, Fernando and
Davison, Andrew and
Shachnev, Dmitry and
Ghosh, Satrajit},
title = {nipy/nipype: Release 0.13.1},
month = may,
year = 2017,
doi = {10.5281/zenodo.581704},
url = {https://doi.org/10.5281/zenodo.581704}
}
If you are a Nipype contributor and your name is not mentioned above please submit a Pull Request modifying .zenodo.json file.
When publishing results obtained using Nipype we strongly encourage citing the above reference to give credit to all Nipype contributors. However, if for some reason the journal you are publishing with does not allow you do cite software this way you can use the initial paper published in 2011 (see below).
Reference
Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. (2011). Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. Front. Neuroimform. 5:13.
@article { Gorgolewski2011,
title = "Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python.",
year = "2011",
author = "Krzysztof Gorgolewski and Christopher D Burns and Cindee Madison and Dav Clark and Yaroslav O Halchenko and Michael L Waskom and Satrajit S Ghosh",
journal = "Front Neuroinform",
volume = "5",
month = "08",
doi = "10.3389/fninf.2011.00013",
pubmed = "21897815",
url = "http://dx.doi.org/10.3389/fninf.2011.00013",
issn = "1662-5196"}
Code contributors¶
Funding¶
Nipype is currently supported by 1R01EB020740-01A1 Nipype: Dataflows for Reproducible Biomedical Research.
Satrajit Ghosh work on this project was partially funded by NIBIB R03EB008673 and by the INCF through a contract with TankThink Labs, LLC. Chris Burns was supported by NIMH grant 5R01MH081909-02 Continued Development and Maintenance of the Neuroimaging in Python Project. Hans Jonson was supported by 2 U54 EB005149 - 06 Core 2b Huntington’s Disease - Driving Biological Project, S10 RR023392 Enterprise Storage In A Collaborative Neuroimaging Environment, R01 NS040068 Neurobiological Predictors of Huntington’s Disease, and UL1 TR000442 University of Iowa Clinical and Translational Science Program.
We would also like to thank JetBrains for providing Pycharm licenses.