interfaces.slicer.filtering.extractskeleton¶
ExtractSkeleton¶
Wraps command **ExtractSkeleton **
title: Extract Skeleton
category: Filtering
description: Extract the skeleton of a binary object. The skeleton can be limited to being a 1D curve or allowed to be a full 2D manifold. The branches of the skeleton can be pruned so that only the maximal center skeleton is returned.
version: 0.1.0.$Revision: 2104 $(alpha)
documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/ExtractSkeleton
contributor: Pierre Seroul (UNC), Martin Styner (UNC), Guido Gerig (UNC), Stephen Aylward (Kitware)
acknowledgements: The original implementation of this method was provided by ETH Zurich, Image Analysis Laboratory of Profs Olaf Kuebler, Gabor Szekely and Guido Gerig. Martin Styner at UNC, Chapel Hill made enhancements. Wrapping for Slicer was provided by Pierre Seroul and Stephen Aylward at Kitware, Inc.
Inputs:
[Mandatory]
[Optional]
InputImageFileName: (an existing file name)
Input image
flag: %s, position: -2
OutputImageFileName: (a boolean or a file name)
Skeleton of the input image
flag: %s, position: -1
args: (a unicode string)
Additional parameters to the command
flag: %s
dontPrune: (a boolean)
Return the full skeleton, not just the maximal skeleton
flag: --dontPrune
environ: (a dictionary with keys which are a bytes or None or a value
of class 'str' and with values which are a bytes or None or a value
of class 'str', nipype default value: {})
Environment variables
numPoints: (an integer (int or long))
Number of points used to represent the skeleton
flag: --numPoints %d
pointsFile: (a unicode string)
Name of the file to store the coordinates of the central (1D)
skeleton points
flag: --pointsFile %s
type: ('1D' or '2D')
Type of skeleton to create
flag: --type %s
Outputs:
OutputImageFileName: (an existing file name)
Skeleton of the input image