interfaces.slicer.utilities

EMSegmentTransformToNewFormat

Link to code

Wraps command **EMSegmentTransformToNewFormat **

title:

Transform MRML Files to New EMSegmenter Standard

category:

Utilities

description:

Transform MRML Files to New EMSegmenter Standard

Inputs:

[Mandatory]

[Optional]
args: (a string)
        Additional parameters to the command
        flag: %s
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
inputMRMLFileName: (an existing file name)
        Active MRML scene that contains EMSegment algorithm parameters in
        the format before 3.6.3 - please include absolute file name in path.
        flag: --inputMRMLFileName %s
outputMRMLFileName: (a boolean or a file name)
        Write out the MRML scene after transformation to format 3.6.3 has
        been made. - has to be in the same directory as the input MRML file
        due to Slicer Core bug - please include absolute file name in path
        flag: --outputMRMLFileName %s
templateFlag: (a boolean)
        Set to true if the transformed mrml file should be used as template
        file
        flag: --templateFlag
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal immediately
        (default), `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

Outputs:

outputMRMLFileName: (an existing file name)
        Write out the MRML scene after transformation to format 3.6.3 has
        been made. - has to be in the same directory as the input MRML file
        due to Slicer Core bug - please include absolute file name in path