interfaces.slicer.quantification.changequantification

IntensityDifferenceMetric

Link to code

Wraps command **IntensityDifferenceMetric **

title:

Intensity Difference Change Detection (FAST)

category:

Quantification.ChangeQuantification

description:

Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.

version: 0.1

contributor: Andrey Fedorov

acknowledgements:

Inputs:

[Mandatory]

[Optional]
args: (a string)
        Additional parameters to the command
        flag: %s
baselineSegmentationVolume: (an existing file name)
        Label volume that contains segmentation of the structure of interest
        in the baseline volume.
        flag: %s, position: -3
baselineVolume: (an existing file name)
        Baseline volume to be compared to
        flag: %s, position: -4
changingBandSize: (an integer (int or long))
        How far (in mm) from the boundary of the segmentation should the
        intensity changes be considered.
        flag: --changingBandSize %d
environ: (a dictionary with keys which are a value of type 'str' and
         with values which are a value of type 'str', nipype default value:
         {})
        Environment variables
followupVolume: (an existing file name)
        Followup volume to be compare to the baseline
        flag: %s, position: -2
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the
        interface fails to run
outputVolume: (a boolean or a file name)
        Output volume to keep the results of change quantification.
        flag: %s, position: -1
reportFileName: (a boolean or a file name)
        Report file name
        flag: --reportFileName %s
sensitivityThreshold: (a float)
        This parameter should be between 0 and 1, and defines how sensitive
        the metric should be to the intensity changes.
        flag: --sensitivityThreshold %f
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
        Control terminal output: `stream` - displays to terminal immediately
        (default), `allatonce` - waits till command is finished to display
        output, `file` - writes output to file, `none` - output is ignored

Outputs:

outputVolume: (an existing file name)
        Output volume to keep the results of change quantification.
reportFileName: (an existing file name)
        Report file name