interfaces.semtools.converters¶
DWICompare¶
Wraps command ** DWICompare **
title: Nrrd DWI comparison
category: Converters
description: Compares two nrrd format DWI images and verifies that gradient magnitudes, gradient directions, measurement frame, and max B0 value are identicle. Used for testing DWIConvert.
version: 0.1.0.$Revision: 916 $(alpha)
documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DWIConvert
license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt
contributor: Mark Scully (UIowa)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Additional support for DTI data produced on Philips scanners was contributed by Vincent Magnotta and Hans Johnson at the University of Iowa.
Inputs:
[Mandatory]
[Optional]
args: (a string)
Additional parameters to the command
flag: %s
environ: (a dictionary with keys which are a value of type 'str' and
with values which are a value of type 'str', nipype default value:
{})
Environment variables
ignore_exception: (a boolean, nipype default value: False)
Print an error message instead of throwing an exception in case the
interface fails to run
inputVolume1: (an existing file name)
First input volume (.nhdr or .nrrd)
flag: --inputVolume1 %s
inputVolume2: (an existing file name)
Second input volume (.nhdr or .nrrd)
flag: --inputVolume2 %s
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
Control terminal output: `stream` - displays to terminal immediately
(default), `allatonce` - waits till command is finished to display
output, `file` - writes output to file, `none` - output is ignored
Outputs:
None
DWISimpleCompare¶
Wraps command ** DWISimpleCompare **
title: Nrrd DWI comparison
category: Converters
description: Compares two nrrd format DWI images and verifies that gradient magnitudes, gradient directions, measurement frame, and max B0 value are identicle. Used for testing DWIConvert.
version: 0.1.0.$Revision: 916 $(alpha)
documentation-url: http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DWIConvert
license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt
contributor: Mark Scully (UIowa)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Additional support for DTI data produced on Philips scanners was contributed by Vincent Magnotta and Hans Johnson at the University of Iowa.
Inputs:
[Mandatory]
[Optional]
args: (a string)
Additional parameters to the command
flag: %s
checkDWIData: (a boolean)
check for existence of DWI data, and if present, compare it
flag: --checkDWIData
environ: (a dictionary with keys which are a value of type 'str' and
with values which are a value of type 'str', nipype default value:
{})
Environment variables
ignore_exception: (a boolean, nipype default value: False)
Print an error message instead of throwing an exception in case the
interface fails to run
inputVolume1: (an existing file name)
First input volume (.nhdr or .nrrd)
flag: --inputVolume1 %s
inputVolume2: (an existing file name)
Second input volume (.nhdr or .nrrd)
flag: --inputVolume2 %s
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
Control terminal output: `stream` - displays to terminal immediately
(default), `allatonce` - waits till command is finished to display
output, `file` - writes output to file, `none` - output is ignored
Outputs:
None