interfaces.semtools.brains.utilities¶
HistogramMatchingFilter¶
Wraps command ** HistogramMatchingFilter **
title: Write Out Image Intensities
category: BRAINS.Utilities
description: For Analysis
version: 0.1
contributor: University of Iowa Department of Psychiatry, http:://www.psychiatry.uiowa.edu
Inputs:
[Mandatory]
[Optional]
args: (a string)
Additional parameters to the command
flag: %s
environ: (a dictionary with keys which are a value of type 'str' and
with values which are a value of type 'str', nipype default value:
{})
Environment variables
histogramAlgorithm: ('OtsuHistogramMatching')
histogram algrithm selection
flag: --histogramAlgorithm %s
ignore_exception: (a boolean, nipype default value: False)
Print an error message instead of throwing an exception in case the
interface fails to run
inputBinaryVolume: (an existing file name)
inputBinaryVolume
flag: --inputBinaryVolume %s
inputVolume: (an existing file name)
The Input image to be computed for statistics
flag: --inputVolume %s
numberOfHistogramBins: (an integer (int or long))
number of histogram bin
flag: --numberOfHistogramBins %d
numberOfMatchPoints: (an integer (int or long))
number of histogram matching points
flag: --numberOfMatchPoints %d
outputVolume: (a boolean or a file name)
Output Image File Name
flag: --outputVolume %s
referenceBinaryVolume: (an existing file name)
referenceBinaryVolume
flag: --referenceBinaryVolume %s
referenceVolume: (an existing file name)
The Input image to be computed for statistics
flag: --referenceVolume %s
terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
Control terminal output: `stream` - displays to terminal immediately
(default), `allatonce` - waits till command is finished to display
output, `file` - writes output to file, `none` - output is ignored
verbose: (a boolean)
verbose mode running for debbuging
flag: --verbose
writeHistogram: (a string)
decide if histogram data would be written with prefixe of the file
name
flag: --writeHistogram %s
Outputs:
outputVolume: (an existing file name)
Output Image File Name