nipype.interfaces.slicer.quantification.changequantification module¶
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IntensityDifferenceMetric¶
Bases: SEMLikeCommandLine
Wrapped executable:
IntensityDifferenceMetric
.
- title:
Intensity Difference Change Detection (FAST)
- category:
Quantification.ChangeQuantification
- description:
Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.
version: 0.1
contributor: Andrey Fedorov
acknowledgements:
- Optional Inputs
args (a string) – Additional parameters to the command. Maps to a command-line argument:
%s
.baselineSegmentationVolume (a pathlike object or string representing an existing file) – Label volume that contains segmentation of the structure of interest in the baseline volume. Maps to a command-line argument:
%s
(position: -3).baselineVolume (a pathlike object or string representing an existing file) – Baseline volume to be compared to. Maps to a command-line argument:
%s
(position: -4).changingBandSize (an integer) – How far (in mm) from the boundary of the segmentation should the intensity changes be considered. Maps to a command-line argument:
--changingBandSize %d
.environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value:
{}
)followupVolume (a pathlike object or string representing an existing file) – Followup volume to be compare to the baseline. Maps to a command-line argument:
%s
(position: -2).outputVolume (a boolean or a pathlike object or string representing a file) – Output volume to keep the results of change quantification. Maps to a command-line argument:
%s
(position: -1).reportFileName (a boolean or a pathlike object or string representing a file) – Report file name. Maps to a command-line argument:
--reportFileName %s
.sensitivityThreshold (a float) – This parameter should be between 0 and 1, and defines how sensitive the metric should be to the intensity changes. Maps to a command-line argument:
--sensitivityThreshold %f
.- Outputs
outputVolume (a pathlike object or string representing an existing file) – Output volume to keep the results of change quantification.
reportFileName (a pathlike object or string representing an existing file) – Report file name.