nipype.interfaces.slicer.filtering.arithmetic module¶
Autogenerated file - DO NOT EDIT If you spot a bug, please report it on the mailing list and/or change the generator.
AddScalarVolumes¶
Bases: SEMLikeCommandLine
Wrapped executable:
AddScalarVolumes
.title: Add Scalar Volumes
category: Filtering.Arithmetic
description: Adds two images. Although all image types are supported on input, only signed types are produced. The two images do not have to have the same dimensions.
version: 0.1.0.$Revision: 19608 $(alpha)
documentation-url: http://slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/Add
contributor: Bill Lorensen (GE)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
- Optional Inputs
args (a string) – Additional parameters to the command. Maps to a command-line argument:
%s
.environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value:
{}
)inputVolume1 (a pathlike object or string representing an existing file) – Input volume 1. Maps to a command-line argument:
%s
(position: -3).inputVolume2 (a pathlike object or string representing an existing file) – Input volume 2. Maps to a command-line argument:
%s
(position: -2).order (‘0’ or ‘1’ or ‘2’ or ‘3’) – Interpolation order if two images are in different coordinate frames or have different sampling. Maps to a command-line argument:
--order %s
.outputVolume (a boolean or a pathlike object or string representing a file) – Volume1 + Volume2. Maps to a command-line argument:
%s
(position: -1).- Outputs
outputVolume (a pathlike object or string representing an existing file) – Volume1 + Volume2.
CastScalarVolume¶
Bases: SEMLikeCommandLine
Wrapped executable:
CastScalarVolume
.title: Cast Scalar Volume
category: Filtering.Arithmetic
description: Cast a volume to a given data type. Use at your own risk when casting an input volume into a lower precision type! Allows casting to the same type as the input volume.
version: 0.1.0.$Revision: 2104 $(alpha)
documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/Cast
contributor: Nicole Aucoin (SPL, BWH), Ron Kikinis (SPL, BWH)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
- Optional Inputs
InputVolume (a pathlike object or string representing an existing file) – Input volume, the volume to cast. Maps to a command-line argument:
%s
(position: -2).OutputVolume (a boolean or a pathlike object or string representing a file) – Output volume, cast to the new type. Maps to a command-line argument:
%s
(position: -1).args (a string) – Additional parameters to the command. Maps to a command-line argument:
%s
.environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value:
{}
)type (‘Char’ or ‘UnsignedChar’ or ‘Short’ or ‘UnsignedShort’ or ‘Int’ or ‘UnsignedInt’ or ‘Float’ or ‘Double’) – Type for the new output volume. Maps to a command-line argument:
--type %s
.- Outputs
OutputVolume (a pathlike object or string representing an existing file) – Output volume, cast to the new type.
MaskScalarVolume¶
Bases: SEMLikeCommandLine
Wrapped executable:
MaskScalarVolume
.title: Mask Scalar Volume
category: Filtering.Arithmetic
description: Masks two images. The output image is set to 0 everywhere except where the chosen label from the mask volume is present, at which point it will retain it’s original values. Although all image types are supported on input, only signed types are produced. The two images do not have to have the same dimensions.
version: 0.1.0.$Revision: 8595 $(alpha)
documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/Mask
contributor: Nicole Aucoin (SPL, BWH), Ron Kikinis (SPL, BWH)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
- Optional Inputs
InputVolume (a pathlike object or string representing an existing file) – Input volume to be masked. Maps to a command-line argument:
%s
(position: -3).MaskVolume (a pathlike object or string representing an existing file) – Label volume containing the mask. Maps to a command-line argument:
%s
(position: -2).OutputVolume (a boolean or a pathlike object or string representing a file) – Output volume: Input Volume masked by label value from Mask Volume. Maps to a command-line argument:
%s
(position: -1).args (a string) – Additional parameters to the command. Maps to a command-line argument:
%s
.environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value:
{}
)label (an integer) – Label value in the Mask Volume to use as the mask. Maps to a command-line argument:
--label %d
.replace (an integer) – Value to use for the output volume outside of the mask. Maps to a command-line argument:
--replace %d
.- Outputs
OutputVolume (a pathlike object or string representing an existing file) – Output volume: Input Volume masked by label value from Mask Volume.
MultiplyScalarVolumes¶
Bases: SEMLikeCommandLine
Wrapped executable:
MultiplyScalarVolumes
.title: Multiply Scalar Volumes
category: Filtering.Arithmetic
description: Multiplies two images. Although all image types are supported on input, only signed types are produced. The two images do not have to have the same dimensions.
version: 0.1.0.$Revision: 8595 $(alpha)
documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/Multiply
contributor: Bill Lorensen (GE)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
- Optional Inputs
args (a string) – Additional parameters to the command. Maps to a command-line argument:
%s
.environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value:
{}
)inputVolume1 (a pathlike object or string representing an existing file) – Input volume 1. Maps to a command-line argument:
%s
(position: -3).inputVolume2 (a pathlike object or string representing an existing file) – Input volume 2. Maps to a command-line argument:
%s
(position: -2).order (‘0’ or ‘1’ or ‘2’ or ‘3’) – Interpolation order if two images are in different coordinate frames or have different sampling. Maps to a command-line argument:
--order %s
.outputVolume (a boolean or a pathlike object or string representing a file) – Volume1 * Volume2. Maps to a command-line argument:
%s
(position: -1).- Outputs
outputVolume (a pathlike object or string representing an existing file) – Volume1 * Volume2.
SubtractScalarVolumes¶
Bases: SEMLikeCommandLine
Wrapped executable:
SubtractScalarVolumes
.title: Subtract Scalar Volumes
category: Filtering.Arithmetic
description: Subtracts two images. Although all image types are supported on input, only signed types are produced. The two images do not have to have the same dimensions.
version: 0.1.0.$Revision: 19608 $(alpha)
documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/Subtract
contributor: Bill Lorensen (GE)
acknowledgements: This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
- Optional Inputs
args (a string) – Additional parameters to the command. Maps to a command-line argument:
%s
.environ (a dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’) – Environment variables. (Nipype default value:
{}
)inputVolume1 (a pathlike object or string representing an existing file) – Input volume 1. Maps to a command-line argument:
%s
(position: -3).inputVolume2 (a pathlike object or string representing an existing file) – Input volume 2. Maps to a command-line argument:
%s
(position: -2).order (‘0’ or ‘1’ or ‘2’ or ‘3’) – Interpolation order if two images are in different coordinate frames or have different sampling. Maps to a command-line argument:
--order %s
.outputVolume (a boolean or a pathlike object or string representing a file) – Volume1 - Volume2. Maps to a command-line argument:
%s
(position: -1).- Outputs
outputVolume (a pathlike object or string representing an existing file) – Volume1 - Volume2.